Re: [igraph] read.graph do not upload my network

[Tamás Nepusz]

Hello,  

This does not really seem like a valid GraphML file; it seems like a GEXF file 
with the GraphML root tag. (I know this does not mean much to you if you have a 
biology background). How did you manage to read it into Cytoscape? As far as I 
know, Cytoscape does not support GraphML input natively. How did you produce 
this GraphML file?  

--  
T.


On Thursday, 8 March 2012 at 16:25, Delphine Faugaret wrote:

> Here it comes
>  
> Delph
>  
> De : Tamás Nepusz <address@hidden (mailto:address@hidden)>
> À : Delphine Faugaret <address@hidden (mailto:address@hidden)>; Help for 
> igraph users <address@hidden (mailto:address@hidden)>  
> Envoyé le : Jeudi 8 mars 2012 16h22
> Objet : Re: [igraph] read.graph do not upload my network
>  
> Hello,  
>  
> Please send us your GraphML file to see if igraph has exported it correctly.  
>  
> --  
> T.
>  
>  
> On Thursday, 8 March 2012 at 16:21, Delphine Faugaret wrote:
>  
> > Hello,  
> >  
> > I created a network (around 100 of nodes, undirected, no loops, some nodes 
> > are isolated) in graphml. I checked that I could see the network using 
> > Gephi or cytoscape to be sure that I wrote everything correctly, and it 
> > works.
> > But when I use the function read.graph (read.graph("networks.graphml", 
> > format="graphml")). Of course the line before I specificied the pathway to 
> > find my file.
> > I've got the following answer: Vertices 0, Edges 0, Directed:False.
> >  
> > What did I do wrong?
> >  
> > Delph
> > _______________________________________________
> > igraph-help mailing list
> > address@hidden (mailto:address@hidden) (mailto:address@hidden)
> > https://lists.nongnu.org/mailman/listinfo/igraph-help
>  
>  
>  
> Attachments:  
> - networkstaIFNG3hML.graphml
>