215/215: gnu: r-chippeakanno: Update to 3.18.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 85c1d20fa6fe7cd295cac754939d98159c3ee459
Author: Ricardo Wurmus <address@hidden>
Date:   Mon May 6 00:09:30 2019 +0200

    gnu: r-chippeakanno: Update to 3.18.0.
    
    * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0.
    [propagated-inputs]: Add r-rtracklayer.
---
 gnu/packages/bioconductor.scm | 33 +++++++++++++++++----------------
 1 file changed, 17 insertions(+), 16 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 54849f3..ca001bc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1152,44 +1152,45 @@ determining dependencies between variables, code 
improvement suggestions.")
 (define-public r-chippeakanno
   (package
     (name "r-chippeakanno")
-    (version "3.16.1")
+    (version "3.18.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ChIPpeakAnno" version))
        (sha256
         (base32
-         "1x98d8iwrxjwdz1s5cnvi6flynw9gdkmara9gwf205qxgmy7j3a3"))))
+         "089v16mm5m0rlyyyd0d6rz8gwb852zf3bcdrrw70wanlfjn258q7"))))
     (properties `((upstream-name . "ChIPpeakAnno")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-biocgenerics" ,r-biocgenerics)
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
        ("r-biocmanager" ,r-biocmanager)
-       ("r-biostrings" ,r-biostrings)
-       ("r-delayedarray" ,r-delayedarray)
-       ("r-go-db" ,r-go-db)
        ("r-biomart" ,r-biomart)
+       ("r-biostrings" ,r-biostrings)
        ("r-bsgenome" ,r-bsgenome)
+       ("r-dbi" ,r-dbi)
+       ("r-delayedarray" ,r-delayedarray)
+       ("r-ensembldb" ,r-ensembldb)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicalignments" ,r-genomicalignments)
        ("r-genomicfeatures" ,r-genomicfeatures)
        ("r-genomicranges" ,r-genomicranges)
-       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-go-db" ,r-go-db)
+       ("r-graph" ,r-graph)
+       ("r-idr" ,r-idr)
        ("r-iranges" ,r-iranges)
-       ("r-matrixstats" ,r-matrixstats)
-       ("r-annotationdbi" ,r-annotationdbi)
        ("r-limma" ,r-limma)
+       ("r-matrixstats" ,r-matrixstats)
        ("r-multtest" ,r-multtest)
        ("r-rbgl" ,r-rbgl)
-       ("r-graph" ,r-graph)
        ("r-regioner" ,r-regioner)
-       ("r-dbi" ,r-dbi)
-       ("r-ensembldb" ,r-ensembldb)
-       ("r-biobase" ,r-biobase)
+       ("r-rsamtools" ,r-rsamtools)
+       ("r-rtracklayer" ,r-rtracklayer)
        ("r-s4vectors" ,r-s4vectors)
        ("r-seqinr" ,r-seqinr)
-       ("r-idr" ,r-idr)
-       ("r-genomicalignments" ,r-genomicalignments)
        ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-rsamtools" ,r-rsamtools)
        ("r-venndiagram" ,r-venndiagram)))
     (home-page "http://bioconductor.org/packages/ChIPpeakAnno";)
     (synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments")