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[GNUnet-SVN] r24564 - in gnunet/src: include regex


From: gnunet
Subject: [GNUnet-SVN] r24564 - in gnunet/src: include regex
Date: Fri, 26 Oct 2012 16:33:59 +0200

Author: szengel
Date: 2012-10-26 16:33:59 +0200 (Fri, 26 Oct 2012)
New Revision: 24564

Added:
   gnunet/src/regex/gnunet-regex-simulation-profiler.c
   gnunet/src/regex/regex_simulation_profiler_test.conf
Modified:
   gnunet/src/include/gnunet_regex_lib.h
   gnunet/src/regex/Makefile.am
   gnunet/src/regex/regex.c
   gnunet/src/regex/regex_internal.h
   gnunet/src/regex/test_regex_eval_api.c
   gnunet/src/regex/test_regex_graph_api.c
   gnunet/src/regex/test_regex_iterate_api.c
   gnunet/src/regex/test_regex_proofs.c
Log:
- Added path compression parameter to DFA construction API
- Moved NFA construction to internal header
- Added regex simulation profiler (for profiling the NFA, that results by 
merging
  several DFAs in the DHT, in a database)


Modified: gnunet/src/include/gnunet_regex_lib.h
===================================================================
--- gnunet/src/include/gnunet_regex_lib.h       2012-10-26 14:05:59 UTC (rev 
24563)
+++ gnunet/src/include/gnunet_regex_lib.h       2012-10-26 14:33:59 UTC (rev 
24564)
@@ -41,7 +41,7 @@
 /**
  * Constant for how many bits the initial string regex should have.
  */
-#define GNUNET_REGEX_INITIAL_BITS 24
+#define GNUNET_REGEX_INITIAL_BYTES 24
 
 
 /**
@@ -80,27 +80,25 @@
 
 
 /**
- * Construct an NFA by parsing the regex string of length 'len'.
+ * Construct DFA for the given 'regex' of length 'len'.
  *
- * @param regex regular expression string.
- * @param len length of the string.
+ * Path compression means, that for example a DFA o -> a -> b -> c -> o will be
+ * compressed to o -> abc -> o. Note that this parameter influences the
+ * non-determinism of states of the resulting NFA in the DHT (number of 
outgoing
+ * edges with the same label). For example for an application that stores IPv4
+ * addresses as bitstrings it could make sense to limit the path compression to
+ * 4 or 8.
  *
- * @return NFA, needs to be freed using GNUNET_REGEX_destroy_automaton.
- */
-struct GNUNET_REGEX_Automaton *
-GNUNET_REGEX_construct_nfa (const char *regex, const size_t len);
-
-
-/**
- * Construct DFA for the given 'regex' of length 'len'.
- *
  * @param regex regular expression string.
  * @param len length of the regular expression.
- *
- * @return DFA, needs to be freed using GNUNET_REGEX_destroy_automaton.
+ * @param max_path_len limit the path compression length to the
+ *        given value. If set to 1, no path compression is applied. Set to 0 
for
+ *        maximal possible path compression (generally not desireable).
+ * @return DFA, needs to be freed using GNUNET_REGEX_automaton_destroy.
  */
 struct GNUNET_REGEX_Automaton *
-GNUNET_REGEX_construct_dfa (const char *regex, const size_t len);
+GNUNET_REGEX_construct_dfa (const char *regex, const size_t len,
+                            int max_path_len);
 
 
 /**

Modified: gnunet/src/regex/Makefile.am
===================================================================
--- gnunet/src/regex/Makefile.am        2012-10-26 14:05:59 UTC (rev 24563)
+++ gnunet/src/regex/Makefile.am        2012-10-26 14:33:59 UTC (rev 24564)
@@ -19,6 +19,20 @@
   $(GN_LIB_LDFLAGS) \
    -version-info 0:0:0
 
+if HAVE_MYSQL
+noinst_PROGRAMS = \
+gnunet-regex-simulation-profiler
+
+gnunet_regex_simulation_profiler_SOURCES = \
+  gnunet-regex-simulation-profiler.c
+gnunet_regex_simulation_profiler_LDADD = \
+  $(top_builddir)/src/util/libgnunetutil.la \
+  $(top_builddir)/src/regex/libgnunetregex.la \
+  $(top_builddir)/src/mysql/libgnunetmysql.la
+gnunet_regex_simulation_profiler_DEPENDENCIES = \
+  libgnunetregex.la
+endif
+
 check_PROGRAMS = \
   test_regex_eval_api \
   test_regex_iterate_api \

Added: gnunet/src/regex/gnunet-regex-simulation-profiler.c
===================================================================
--- gnunet/src/regex/gnunet-regex-simulation-profiler.c                         
(rev 0)
+++ gnunet/src/regex/gnunet-regex-simulation-profiler.c 2012-10-26 14:33:59 UTC 
(rev 24564)
@@ -0,0 +1,519 @@
+/*
+     This file is part of GNUnet.
+     (C) 2011, 2012 Christian Grothoff (and other contributing authors)
+
+     GNUnet is free software; you can redistribute it and/or modify
+     it under the terms of the GNU General Public License as published
+     by the Free Software Foundation; either version 3, or (at your
+     option) any later version.
+
+     GNUnet is distributed in the hope that it will be useful, but
+     WITHOUT ANY WARRANTY; without even the implied warranty of
+     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+     General Public License for more details.
+
+     You should have received a copy of the GNU General Public License
+     along with GNUnet; see the file COPYING.  If not, write to the
+     Free Software Foundation, Inc., 59 Temple Place - Suite 330,
+     Boston, MA 02111-1307, USA.
+*/
+
+/**
+ * @file regex/gnunet-regex-simulation-profiler.c
+ * @brief Regex profiler that dumps all DFAs into a database instead of
+ *        using the DHT (with mesh).
+ * @author Maximilian Szengel
+ *
+ */
+
+#include "platform.h"
+#include "gnunet_util_lib.h"
+#include "gnunet_regex_lib.h"
+#include "gnunet_mysql_lib.h"
+
+/**
+ * Simple struct to keep track of progress, and print a
+ * nice little percentage meter for long running tasks.
+ */
+struct ProgressMeter
+{
+  unsigned int total;
+
+  unsigned int modnum;
+
+  unsigned int dotnum;
+
+  unsigned int completed;
+
+  int print;
+
+  char *startup_string;
+};
+
+
+/**
+ * Handle for the progress meter
+ */
+static struct ProgressMeter *meter;
+
+/**
+ * Abort task identifier.
+ */
+static GNUNET_SCHEDULER_TaskIdentifier abort_task;
+
+/**
+ * Scan task identifier;
+ */
+static GNUNET_SCHEDULER_TaskIdentifier scan_task;
+
+/**
+ * Global testing status.
+ */
+static int result;
+
+/**
+ * MySQL context.
+ */
+static struct GNUNET_MYSQL_Context *mysql_ctx;
+
+/**
+ * MySQL table name.
+ */
+static char *table_name;
+
+/**
+ * Policy dir containing files that contain policies.
+ */
+static char *policy_dir;
+
+/**
+ * Number of policy files.
+ */
+static unsigned int num_policy_files;
+
+/**
+ * Number of policies.
+ */
+static unsigned int num_policies;
+
+/**
+ * Maximal path compression length.
+ */
+static unsigned int max_path_compression;
+
+
+/**
+ * Create a meter to keep track of the progress of some task.
+ *
+ * @param total the total number of items to complete
+ * @param start_string a string to prefix the meter with (if printing)
+ * @param print GNUNET_YES to print the meter, GNUNET_NO to count
+ *              internally only
+ *
+ * @return the progress meter
+ */
+static struct ProgressMeter *
+create_meter (unsigned int total, char *start_string, int print)
+{
+  struct ProgressMeter *ret;
+
+  ret = GNUNET_malloc (sizeof (struct ProgressMeter));
+  ret->print = print;
+  ret->total = total;
+  ret->modnum = total / 4;
+  if (ret->modnum == 0)         /* Divide by zero check */
+    ret->modnum = 1;
+  ret->dotnum = (total / 50) + 1;
+  if (start_string != NULL)
+    ret->startup_string = GNUNET_strdup (start_string);
+  else
+    ret->startup_string = GNUNET_strdup ("");
+
+  return ret;
+}
+
+
+/**
+ * Update progress meter (increment by one).
+ *
+ * @param meter the meter to update and print info for
+ *
+ * @return GNUNET_YES if called the total requested,
+ *         GNUNET_NO if more items expected
+ */
+static int
+update_meter (struct ProgressMeter *meter)
+{
+  if (meter->print == GNUNET_YES)
+  {
+    if (meter->completed % meter->modnum == 0)
+    {
+      if (meter->completed == 0)
+      {
+        FPRINTF (stdout, "%sProgress: [0%%", meter->startup_string);
+      }
+      else
+        FPRINTF (stdout, "%d%%",
+                 (int) (((float) meter->completed / meter->total) * 100));
+    }
+    else if (meter->completed % meter->dotnum == 0)
+      FPRINTF (stdout, "%s",  ".");
+
+    if (meter->completed + 1 == meter->total)
+      FPRINTF (stdout, "%d%%]\n", 100);
+    fflush (stdout);
+  }
+  meter->completed++;
+
+  if (meter->completed == meter->total)
+    return GNUNET_YES;
+  if (meter->completed > meter->total)
+    GNUNET_log (GNUNET_ERROR_TYPE_WARNING, "Progress meter overflow!!\n");
+  return GNUNET_NO;
+}
+
+
+/**
+ * Reset progress meter.
+ *
+ * @param meter the meter to reset
+ *
+ * @return GNUNET_YES if meter reset,
+ *         GNUNET_SYSERR on error
+ */
+static int
+reset_meter (struct ProgressMeter *meter)
+{
+  if (meter == NULL)
+    return GNUNET_SYSERR;
+
+  meter->completed = 0;
+  return GNUNET_YES;
+}
+
+
+/**
+ * Release resources for meter
+ *
+ * @param meter the meter to free
+ */
+static void
+free_meter (struct ProgressMeter *meter)
+{
+  GNUNET_free_non_null (meter->startup_string);
+  GNUNET_free (meter);
+}
+
+
+/**
+ * Shutdown task.
+ *
+ * @param cls NULL
+ * @param tc the task context
+ */
+static void
+do_shutdown (void *cls, const struct GNUNET_SCHEDULER_TaskContext *tc)
+{
+  if (NULL != mysql_ctx)
+    GNUNET_MYSQL_context_destroy (mysql_ctx);
+  if (NULL != meter)
+    free_meter (meter);
+
+  GNUNET_SCHEDULER_shutdown ();        /* Stop scheduler to shutdown testbed 
run */
+}
+
+
+/**
+ * abort task to run on test timed out
+ *
+ * @param cls NULL
+ * @param tc the task context
+ */
+static void
+do_abort (void *cls, const struct GNUNET_SCHEDULER_TaskContext *tc)
+{
+  GNUNET_log (GNUNET_ERROR_TYPE_WARNING, "Aborting\n");
+  abort_task = GNUNET_SCHEDULER_NO_TASK;
+  GNUNET_SCHEDULER_cancel (scan_task);
+  scan_task = GNUNET_SCHEDULER_NO_TASK;
+  result = GNUNET_SYSERR;
+  GNUNET_SCHEDULER_add_now (&do_shutdown, NULL);
+}
+
+
+/**
+ * Iterator over all states that inserts each state into the MySQL db.
+ *
+ * @param cls closure.
+ * @param key hash for current state.
+ * @param proof proof for current state.
+ * @param accepting GNUNET_YES if this is an accepting state, GNUNET_NO if not.
+ * @param num_edges number of edges leaving current state.
+ * @param edges edges leaving current state.
+ */
+static void
+regex_iterator (void *cls,
+                const struct GNUNET_HashCode *key,
+                const char *proof,
+                int accepting,
+                unsigned int num_edges,
+                const struct GNUNET_REGEX_Edge *edges)
+{
+  char *stmt;
+  unsigned int i;
+
+  GNUNET_assert (NULL != mysql_ctx);
+
+  for (i = 0; i < num_edges; i++)
+  {
+    GNUNET_asprintf (&stmt,
+                     "INSERT IGNORE INTO `%s` (`key`, `label`, `to_key`, 
`accepting`) VALUES ('%s', '%s', '%s', '%d');",
+                     table_name, GNUNET_h2s_full (key), edges[i].label,
+                     GNUNET_h2s_full (&edges[i].destination), accepting);
+
+    GNUNET_log (GNUNET_ERROR_TYPE_DEBUG, "Insert statement: %s\n", stmt);
+
+    if (GNUNET_OK != GNUNET_MYSQL_statement_run (mysql_ctx, stmt))
+    {
+      GNUNET_log (GNUNET_ERROR_TYPE_ERROR,
+                  "Error executing mysql statement: %s\n", stmt);
+    }
+
+    GNUNET_free (stmt);
+  }
+}
+
+
+/**
+ * Announce a regex by creating the DFA and iterating over each state, 
inserting
+ * each state into a MySQL database.
+ *
+ * @param regex regular expression.
+ * @return GNUNET_OK on success, GNUNET_SYSERR on failure.
+ */
+static int
+announce_regex (const char *regex)
+{
+  struct GNUNET_REGEX_Automaton *dfa;
+
+  dfa = GNUNET_REGEX_construct_dfa (regex, strlen (regex), 
max_path_compression);
+
+  if (NULL == dfa)
+  {
+    GNUNET_log (GNUNET_ERROR_TYPE_ERROR,
+                "Failed to create DFA for regex %s\n", regex);
+    abort_task = GNUNET_SCHEDULER_add_now (&do_abort, NULL);
+    return GNUNET_SYSERR;
+  }
+
+  GNUNET_REGEX_iterate_all_edges (dfa, &regex_iterator, NULL);
+
+  GNUNET_REGEX_automaton_destroy (dfa);
+
+  return GNUNET_OK;
+}
+
+
+/**
+ * Function called with a filename.
+ *
+ * @param cls closure
+ * @param filename complete filename (absolute path)
+ * @return GNUNET_OK to continue to iterate,
+ *  GNUNET_SYSERR to abort iteration with error!
+ */
+int
+policy_filename_cb (void *cls, const char *filename)
+{
+  char *regex;
+  char *data;
+  char *buf;
+  uint64_t filesize;
+  unsigned int offset;
+
+  GNUNET_assert (NULL != filename);
+
+  GNUNET_log (GNUNET_ERROR_TYPE_INFO,
+              "Announcing regexes from file %s\n",
+              filename);
+
+  if (GNUNET_YES != GNUNET_DISK_file_test (filename))
+  {
+    GNUNET_log (GNUNET_ERROR_TYPE_WARNING,
+                "Could not find policy file %s\n", filename);
+    return GNUNET_OK;
+  }
+  if (GNUNET_OK != GNUNET_DISK_file_size (filename, &filesize, GNUNET_YES, 
GNUNET_YES))
+    filesize = 0;
+  if (0 == filesize)
+  {
+    GNUNET_log (GNUNET_ERROR_TYPE_WARNING, "Policy file %s is empty.\n", 
filename);
+    return GNUNET_OK;
+  }
+  data = GNUNET_malloc (filesize);
+  if (filesize != GNUNET_DISK_fn_read (filename, data, filesize))
+  {
+    GNUNET_free (data);
+    GNUNET_log (GNUNET_ERROR_TYPE_WARNING, "Could not read policy file %s.\n",
+                filename);
+    return GNUNET_OK;
+  }
+
+  update_meter (meter);
+
+  buf = data;
+  offset = 0;
+  regex = NULL;
+  while (offset < (filesize - 1))
+  {
+    offset++;
+    if (((data[offset] == '\n')) && (buf != &data[offset]))
+    {
+      data[offset] = '\0';
+      regex = buf;
+      GNUNET_assert (NULL != regex);
+      GNUNET_log (GNUNET_ERROR_TYPE_DEBUG, "Announcing regex: %s\n",
+                  regex);
+      num_policies++;
+
+      if (GNUNET_OK != announce_regex (regex))
+      {
+        GNUNET_log (GNUNET_ERROR_TYPE_ERROR,
+                    "Could not announce regex %s\n", regex);
+      }
+
+      buf = &data[offset + 1];
+    }
+    else if ((data[offset] == '\n') || (data[offset] == '\0'))
+      buf = &data[offset + 1];
+  }
+  GNUNET_free (data);
+  return GNUNET_OK;
+}
+
+
+/**
+ * Iterate over files contained in policy_dir.
+ *
+ * @param cls NULL
+ * @param tc the task context
+ */
+static void
+do_directory_scan (void *cls, const struct GNUNET_SCHEDULER_TaskContext *tc)
+{
+  struct GNUNET_TIME_Absolute start_time;
+  struct GNUNET_TIME_Relative duration;
+
+  if (GNUNET_SCHEDULER_NO_TASK != abort_task)
+    GNUNET_SCHEDULER_cancel (abort_task);
+
+  meter = create_meter (num_policy_files, "Announcing policy files\n", 
GNUNET_YES);
+  start_time = GNUNET_TIME_absolute_get ();
+  GNUNET_DISK_directory_scan (policy_dir,
+                              &policy_filename_cb,
+                              NULL);
+  duration = GNUNET_TIME_absolute_get_duration (start_time);
+  reset_meter (meter);
+  free_meter (meter);
+  meter = NULL;
+
+  printf ("Announced %u files containing %u policies in %s\n",
+          num_policy_files, num_policies,
+          GNUNET_STRINGS_relative_time_to_string (duration, GNUNET_NO));
+
+  result = GNUNET_OK;
+  GNUNET_SCHEDULER_add_now (&do_shutdown, NULL);
+}
+
+
+/**
+ * Main function that will be run by the scheduler.
+ *
+ * @param cls closure
+ * @param args remaining command-line arguments
+ * @param cfgfile name of the configuration file used (for saving, can be 
NULL!)
+ * @param config configuration
+ */
+static void
+run (void *cls, char *const *args, const char *cfgfile,
+     const struct GNUNET_CONFIGURATION_Handle *config)
+{
+  if (NULL == args[0])
+  {
+    fprintf (stderr, _("No policy directory specified on command line. 
Exiting.\n"));
+    result = GNUNET_SYSERR;
+    return;
+  }
+  if (GNUNET_YES != GNUNET_DISK_directory_test (args[0]))
+  {
+    fprintf (stderr, _("Specified policies directory does not exist. 
Exiting.\n"));
+    result = GNUNET_SYSERR;
+    return;
+  }
+  policy_dir = args[0];
+
+  num_policy_files = GNUNET_DISK_directory_scan (policy_dir,
+                                                 NULL,
+                                                 NULL);
+  meter = NULL;
+
+  if (NULL == table_name)
+  {
+    GNUNET_log (GNUNET_ERROR_TYPE_WARNING, "No table name specified, using 
default \"NFA\".\n");
+    table_name = "NFA";
+  }
+
+  mysql_ctx = GNUNET_MYSQL_context_create (config, "regex-mysql");
+  if (NULL == mysql_ctx)
+  {
+    GNUNET_log (GNUNET_ERROR_TYPE_ERROR, "Failed to create mysql context\n");
+    result = GNUNET_SYSERR;
+    return;
+  }
+
+  result = GNUNET_OK;
+
+  scan_task = GNUNET_SCHEDULER_add_now (&do_directory_scan, NULL);
+
+  abort_task =
+    GNUNET_SCHEDULER_add_delayed (GNUNET_TIME_relative_multiply
+                                  (GNUNET_TIME_UNIT_SECONDS, 10), &do_abort,
+                                  NULL);
+}
+
+
+/**
+ * Main function.
+ *
+ * @param argc argument count
+ * @param argv argument values
+ * @return 0 on success
+ */
+int
+main (int argc, char *const *argv)
+{
+  static const struct GNUNET_GETOPT_CommandLineOption options[] = {
+    {'t', "table", "TABLENAME",
+     gettext_noop ("name of the table to write DFAs"),
+     1, &GNUNET_GETOPT_set_string, &table_name},
+    {'p', "max-path-compression", "MAX_PATH_COMPRESSION",
+     gettext_noop ("maximum path compression length"),
+     1, &GNUNET_GETOPT_set_uint, &max_path_compression},
+    GNUNET_GETOPT_OPTION_END
+  };
+  int ret;
+
+  if (GNUNET_OK != GNUNET_STRINGS_get_utf8_args (argc, argv, &argc, &argv))
+    return 2;
+
+  result = GNUNET_SYSERR;
+  ret =
+      GNUNET_PROGRAM_run (argc, argv, "gnunet-regex-simulationprofiler 
[OPTIONS] policy-dir",
+                          _("Profiler for regex library"),
+                          options, &run, NULL);
+  if (GNUNET_OK != ret)
+    return ret;
+  if (GNUNET_OK != result)
+    return 1;
+  return 0;
+}

Modified: gnunet/src/regex/regex.c
===================================================================
--- gnunet/src/regex/regex.c    2012-10-26 14:05:59 UTC (rev 24563)
+++ gnunet/src/regex/regex.c    2012-10-26 14:33:59 UTC (rev 24564)
@@ -1687,7 +1687,7 @@
 //        || cur->transition_count > 1
         || GNUNET_YES == cur->marked) || (start != dfa->start && max_len > 0 &&
                                           max_len == strlen (label)) ||
-       (start == dfa->start && GNUNET_REGEX_INITIAL_BITS == strlen (label))))
+       (start == dfa->start && GNUNET_REGEX_INITIAL_BYTES == strlen (label))))
   {
     t = GNUNET_malloc (sizeof (struct GNUNET_REGEX_Transition));
     t->label = GNUNET_strdup (label);
@@ -2482,17 +2482,26 @@
   }
 }
 
-
 /**
- * Construct DFA for the given 'regex' of length 'len'
+ * Construct DFA for the given 'regex' of length 'len'.
  *
- * @param regex regular expression string
- * @param len length of the regular expression
+ * Path compression means, that for example a DFA o -> a -> b -> c -> o will be
+ * compressed to o -> abc -> o. Note that this parameter influences the
+ * non-determinism of states of the resulting NFA in the DHT (number of 
outgoing
+ * edges with the same label). For example for an application that stores IPv4
+ * addresses as bitstrings it could make sense to limit the path compression to
+ * 4 or 8.
  *
- * @return DFA, needs to be freed using GNUNET_REGEX_destroy_automaton
+ * @param regex regular expression string.
+ * @param len length of the regular expression.
+ * @param max_path_len limit the path compression length to the
+ *        given value. If set to 1, no path compression is applied. Set to 0 
for
+ *        maximal possible path compression (generally not desireable).
+ * @return DFA, needs to be freed using GNUNET_REGEX_automaton_destroy.
  */
 struct GNUNET_REGEX_Automaton *
-GNUNET_REGEX_construct_dfa (const char *regex, const size_t len)
+GNUNET_REGEX_construct_dfa (const char *regex, const size_t len,
+                            int max_path_len)
 {
   struct GNUNET_REGEX_Context ctx;
   struct GNUNET_REGEX_Automaton *dfa;
@@ -2535,7 +2544,8 @@
   automaton_create_proofs (dfa);
 
   // Compress DFA paths
-  dfa_compress_paths (&ctx, dfa, 8);
+  if (1 != max_path_len)
+    dfa_compress_paths (&ctx, dfa, max_path_len);
 
   // Add strides to DFA
   //GNUNET_REGEX_dfa_add_multi_strides (&ctx, dfa, 2);
@@ -2770,7 +2780,7 @@
 
   size =
       string_len <
-      GNUNET_REGEX_INITIAL_BITS ? string_len : GNUNET_REGEX_INITIAL_BITS;
+      GNUNET_REGEX_INITIAL_BYTES ? string_len : GNUNET_REGEX_INITIAL_BYTES;
 
   if (NULL == input_string)
   {
@@ -2931,7 +2941,7 @@
     s->marked = GNUNET_NO;
   }
 
-  iterate_initial_edge (GNUNET_REGEX_INITIAL_BITS, GNUNET_REGEX_INITIAL_BITS,
+  iterate_initial_edge (GNUNET_REGEX_INITIAL_BYTES, GNUNET_REGEX_INITIAL_BYTES,
                         NULL, a->start, iterator, iterator_cls);
 }
 

Modified: gnunet/src/regex/regex_internal.h
===================================================================
--- gnunet/src/regex/regex_internal.h   2012-10-26 14:05:59 UTC (rev 24563)
+++ gnunet/src/regex/regex_internal.h   2012-10-26 14:33:59 UTC (rev 24564)
@@ -267,6 +267,18 @@
 
 
 /**
+ * Construct an NFA by parsing the regex string of length 'len'.
+ *
+ * @param regex regular expression string.
+ * @param len length of the string.
+ *
+ * @return NFA, needs to be freed using GNUNET_REGEX_automaton_destroy.
+ */
+struct GNUNET_REGEX_Automaton *
+GNUNET_REGEX_construct_nfa (const char *regex, const size_t len);
+
+
+/**
  * Function that get's passed to automaton traversal and is called before each
  * next traversal from state 's' using transition 't' to check if traversal
  * should proceed. Return GNUNET_NO to stop traversal or GNUNET_YES to 
continue.

Added: gnunet/src/regex/regex_simulation_profiler_test.conf
===================================================================
--- gnunet/src/regex/regex_simulation_profiler_test.conf                        
        (rev 0)
+++ gnunet/src/regex/regex_simulation_profiler_test.conf        2012-10-26 
14:33:59 UTC (rev 24564)
@@ -0,0 +1,6 @@
+[regex-mysql]
+DATABASE = regex
+USER = gnunet
+PASSWORD = 
+HOST = localhost
+PORT = 3306

Modified: gnunet/src/regex/test_regex_eval_api.c
===================================================================
--- gnunet/src/regex/test_regex_eval_api.c      2012-10-26 14:05:59 UTC (rev 
24563)
+++ gnunet/src/regex/test_regex_eval_api.c      2012-10-26 14:33:59 UTC (rev 
24564)
@@ -92,7 +92,7 @@
     }
 
     /* Match string using DFA */
-    dfa = GNUNET_REGEX_construct_dfa (rand_rx, strlen (rand_rx));
+    dfa = GNUNET_REGEX_construct_dfa (rand_rx, strlen (rand_rx), 0);
     if (NULL == dfa)
     {
       GNUNET_log (GNUNET_ERROR_TYPE_ERROR, "Constructing DFA failed\n");
@@ -123,7 +123,7 @@
 
     /* Match canonical regex */
     dfa =
-        GNUNET_REGEX_construct_dfa (canonical_regex, strlen (canonical_regex));
+      GNUNET_REGEX_construct_dfa (canonical_regex, strlen (canonical_regex), 
0);
     if (NULL == dfa)
     {
       GNUNET_log (GNUNET_ERROR_TYPE_ERROR, "Constructing DFA failed\n");
@@ -333,12 +333,12 @@
     GNUNET_REGEX_automaton_destroy (a);
 
     /* DFA test */
-    a = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex));
+    a = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex), 
0);
     check_dfa += test_automaton (a, &rx, &rxstr[i]);
     check_proof = GNUNET_strdup (GNUNET_REGEX_get_canonical_regex (a));
     GNUNET_REGEX_automaton_destroy (a);
 
-    a = GNUNET_REGEX_construct_dfa (check_proof, strlen (check_proof));
+    a = GNUNET_REGEX_construct_dfa (check_proof, strlen (check_proof), 0);
     check_dfa += test_automaton (a, &rx, &rxstr[i]);
     GNUNET_REGEX_automaton_destroy (a);
     if (0 != check_dfa)

Modified: gnunet/src/regex/test_regex_graph_api.c
===================================================================
--- gnunet/src/regex/test_regex_graph_api.c     2012-10-26 14:05:59 UTC (rev 
24563)
+++ gnunet/src/regex/test_regex_graph_api.c     2012-10-26 14:33:59 UTC (rev 
24564)
@@ -26,6 +26,7 @@
 #include <time.h>
 #include "platform.h"
 #include "gnunet_regex_lib.h"
+#include "regex_internal.h"
 
 #define KEEP_FILES 0
 
@@ -134,19 +135,19 @@
 
 
     // Check DFA graph creation
-    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]));
+    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]), 0);
     GNUNET_REGEX_automaton_save_graph (a, filename, 
GNUNET_REGEX_GRAPH_DEFAULT);
     GNUNET_REGEX_automaton_destroy (a);
     error += filecheck (filename);
 
-    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]));
+    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]), 0);
     GNUNET_REGEX_automaton_save_graph (a, filename,
                                        GNUNET_REGEX_GRAPH_DEFAULT |
                                        GNUNET_REGEX_GRAPH_VERBOSE);
     GNUNET_REGEX_automaton_destroy (a);
     error += filecheck (filename);
 
-    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]));
+    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]), 0);
     GNUNET_REGEX_automaton_save_graph (a, filename,
                                        GNUNET_REGEX_GRAPH_DEFAULT |
                                        GNUNET_REGEX_GRAPH_COLORING);
@@ -154,7 +155,7 @@
     error += filecheck (filename);
 
 
-    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]));
+    a = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]), 0);
     GNUNET_REGEX_automaton_save_graph (a, filename, 
GNUNET_REGEX_GRAPH_DEFAULT);        //|
     //                               GNUNET_REGEX_GRAPH_VERBOSE |
     //GNUNET_REGEX_GRAPH_COLORING);

Modified: gnunet/src/regex/test_regex_iterate_api.c
===================================================================
--- gnunet/src/regex/test_regex_iterate_api.c   2012-10-26 14:05:59 UTC (rev 
24563)
+++ gnunet/src/regex/test_regex_iterate_api.c   2012-10-26 14:33:59 UTC (rev 
24564)
@@ -188,7 +188,7 @@
     ctx.string_count = rxstr[i].string_count;
     ctx.strings = rxstr[i].strings;
     ctx.match_count = 0;
-    dfa = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex));
+    dfa = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex), 
0);
     GNUNET_REGEX_iterate_all_edges (dfa, key_iterator, &ctx);
     num_transitions =
         GNUNET_REGEX_get_transition_count (dfa) - dfa->start->transition_count;
@@ -234,7 +234,7 @@
     ctx.strings = rxstr[i].strings;
     ctx.match_count = 0;
 
-    dfa = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex));
+    dfa = GNUNET_REGEX_construct_dfa (rxstr[i].regex, strlen (rxstr[i].regex), 
0);
     GNUNET_REGEX_dfa_add_multi_strides (NULL, dfa, 2);
     GNUNET_REGEX_iterate_all_edges (dfa, key_iterator, &ctx);
 

Modified: gnunet/src/regex/test_regex_proofs.c
===================================================================
--- gnunet/src/regex/test_regex_proofs.c        2012-10-26 14:05:59 UTC (rev 
24563)
+++ gnunet/src/regex/test_regex_proofs.c        2012-10-26 14:33:59 UTC (rev 
24564)
@@ -46,10 +46,10 @@
   char *c_rx1;
   const char *c_rx2;
 
-  dfa = GNUNET_REGEX_construct_dfa (regex, strlen (regex));
+  dfa = GNUNET_REGEX_construct_dfa (regex, strlen (regex), 1);
   c_rx1 = GNUNET_strdup (GNUNET_REGEX_get_canonical_regex (dfa));
   GNUNET_REGEX_automaton_destroy (dfa);
-  dfa = GNUNET_REGEX_construct_dfa (c_rx1, strlen (c_rx1));
+  dfa = GNUNET_REGEX_construct_dfa (c_rx1, strlen (c_rx1), 1);
   c_rx2 = GNUNET_REGEX_get_canonical_regex (dfa);
 
   error = (0 == strcmp (c_rx1, c_rx2)) ? 0 : 1;
@@ -126,8 +126,8 @@
 
   for (i = 0; i < 8; i += 2)
   {
-    dfa1 = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]));
-    dfa2 = GNUNET_REGEX_construct_dfa (regex[i + 1], strlen (regex[i + 1]));
+    dfa1 = GNUNET_REGEX_construct_dfa (regex[i], strlen (regex[i]), 1);
+    dfa2 = GNUNET_REGEX_construct_dfa (regex[i + 1], strlen (regex[i + 1]), 1);
 
     canon_rx1 = GNUNET_REGEX_get_canonical_regex (dfa1);
     canon_rx2 = GNUNET_REGEX_get_canonical_regex (dfa2);




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