bug#29113: Warnings when starting vim: Relink <libpng/libfreetype> with <libpthread> for IFUNC symbol `longjmp'

[ng0]

Hi,

B. Wilson transcribed 8.7K bytes:
> Hello,
> 
> I recently installed vim-full (8.0.1207) and it's throwing some linker (?)
> warnings at me on startup. The gory details are below, and any help getting to
> the bottom of this would be much appreciated.
> 
> 
> ## Errors
> 
> $ vim -u NONE -esc  # `-u NONE' disables .vimrc, `-esc q' quits immediately
> vim: Relink 
> `/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/lib/libpng16.so.16'
>  with 
> `/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
> for IFUNC symbol `longjmp'
> vim: Relink 
> `/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib/libfreetype.so.6'
>  with 
> `/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
> for IFUNC symbol `longjmp'

I can confirm this. It was known to myself for a long time already,
I didn't classify it as a bug though and therefore didn't report it.


I've tested your report and could reproduce it on GuixSD:

guix environment --ad-hoc vim-full -- vim

The following derivations will be built:
   /gnu/store/lg0k1gz8aijqynnprhqavy4sqdky7l3c-profile.drv
   /gnu/store/zah7wq2c3c91dqz2b87hllwwkrjf1rar-ca-certificate-bundle.drv
   /gnu/store/wf0dr0n3nmiyi8bm2p5dmsf643gsfw6y-info-dir.drv
   /gnu/store/sjlcdgdcmh6v33mmm5amq3qg1hf9vk7q-gtk-im-modules.drv
   /gnu/store/nxbl1x9w8ihxl0sryzffabrxq6n328nz-xdg-desktop-database.drv
   /gnu/store/gxz4zzcnnkyfad2kz761wafipm6c0wx9-fonts-dir.drv
   /gnu/store/999550nc42j0y2gi8xx5f6pvaz71sv92-gtk+-2.24.31.drv
   /gnu/store/24xqg184zjnizpfzgn9xb7pklk14g9c9-gtk-icon-themes.drv
   /gnu/store/1vyhx7i25jd2zl1729fl4dw93rg3x1lk-xdg-mime-database.drv
   /gnu/store/dzdhhsarb6ww1ab16a1igl6a6xlpnb7i-vim-full-8.0.1207.drv
   /gnu/store/s43378pnidpk2mvv7pfdbbxp0ra2bxgn-manual-database.drv
13.0 MB will be downloaded:
   /gnu/store/9hb5qppdfpibnfgm8lr7gqyzcfh84smq-vim-full-8.0.1207
Downloading 
https://mirror.hydra.gnu.org/guix/nar/gzip/9hb5qppdfpibnfgm8lr7gqyzcfh84smq-vim-full-8.0.1207...
 vim-full-8.0.1207  12.4MiB            0B/s 00:12 [                    ]   0.0%

grafting '/gnu/store/h751h6b615w9v6r1amyhxvqqi98kimrs-gtk+-2.24.31' -> 
'/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31'...
grafting '/gnu/store/9hb5qppdfpibnfgm8lr7gqyzcfh84smq-vim-full-8.0.1207' -> 
'/gnu/store/jbpkmj3acvjghjbf14372vwm4rs15c4n-vim-full-8.0.1207'...
Creating manual page database for 0 packages... done in 0.004 s
vim: Relink 
`/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/lib/libpng16.so.16' 
with 
`/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
for IFUNC symbol `longjmp'
vim: Relink 
`/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib/libfreetype.so.6' 
with 
`/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
for IFUNC symbol `longjmp'




> ## Environment
> 
> $ lsb_release -a
> LSB Version:  1.0
> Distributor ID:       VoidLinux
> Description:  Void Linux
> Release:      rolling
> Codename:     void
> 
> $ guix --version
> guix (GNU Guix) 5010d0e36452882eb95666467bb983efa8cca081
> ...
> 
> $ guix package -I vim-full
> vim-full 8.0.1207 out 
> /gnu/store/jbpkmj3acvjghjbf14372vwm4rs15c4n-vim-full-8.0.1207
> 
> $ vim --version
> <copied and formatted below>
> 
> ## Extra Information
> 
> There does appear to be one other instance of a user experiencing the same
> errors but with the package `rofi'. The relevant thread is #28168. In this
> case, a simple `guix pull && guix package -u' seemed to get rid of the 
> warnings
> for them. That's not working for me, and in any case I'd like to figure out
> exactly what's going on.
> 
> 
> ## Vim Version
> 
> VIM - Vi IMproved 8.0 (2016 Sep 12, compiled Jan  1 1970 00:00:01)
> Included patches: 1-1207
> Compiled by address@hidden
> Huge version with GTK2 GUI.  Features included (+) or not (-):
> +acl             +file_in_path    +mouse_sgr       +tag_old_static
> +arabic          +find_in_path    -mouse_sysmouse  -tag_any_white
> +autocmd         +float           +mouse_urxvt     +tcl
> +balloon_eval    +folding         +mouse_xterm     +termguicolors
> +browse          -footer          +multi_byte      +terminal
> ++builtin_terms  +fork()          +multi_lang      +terminfo
> +byte_offset     +gettext         -mzscheme        +termresponse
> +channel         -hangul_input    +netbeans_intg   +textobjects
> +cindent         +iconv           +num64           +timers
> +clientserver    +insert_expand   +packages        +title
> +clipboard       +job             +path_extra      +toolbar
> +cmdline_compl   +jumplist        +perl            +user_commands
> +cmdline_hist    +keymap          +persistent_undo +vertsplit
> +cmdline_info    +lambda          +postscript      +virtualedit
> +comments        +langmap         +printer         +visual
> +conceal         +libcall         +profile         +visualextra
> +cryptv          +linebreak       -python          +viminfo
> +cscope          +lispindent      +python3         +vreplace
> +cursorbind      +listcmds        +quickfix        +wildignore
> +cursorshape     +localmap        +reltime         +wildmenu
> +dialog_con_gui  +lua             +rightleft       +windows
> +diff            +menu            +ruby            +writebackup
> +digraphs        +mksession       +scrollbind      +X11
> +dnd             +modify_fname    +signs           -xfontset
> -ebcdic          +mouse           +smartindent     +xim
> +emacs_tags      +mouseshape      +startuptime     +xpm
> +eval            +mouse_dec       +statusline      +xsmp_interact
> +ex_extra        +mouse_gpm       -sun_workshop    +xterm_clipboard
> +extra_search    -mouse_jsbterm   +syntax          -xterm_save
> +farsi           +mouse_netterm   +tag_binary      
>    system vimrc file: "$VIM/vimrc"
>      user vimrc file: "$HOME/.vimrc"
>  2nd user vimrc file: "~/.vim/vimrc"
>       user exrc file: "$HOME/.exrc"
>   system gvimrc file: "$VIM/gvimrc"
>     user gvimrc file: "$HOME/.gvimrc"
> 2nd user gvimrc file: "~/.vim/gvimrc"
>        defaults file: "$VIMRUNTIME/defaults.vim"
>     system menu file: "$VIMRUNTIME/menu.vim"
>   fall-back for $VIM: "
> /gnu/store/jbpkmj3acvjghjbf14372vwm4rs15c4n-vim-full-8.0.1207/share/vim"
> Compilation:
> gcc -c
>     -I.
>     -Iproto
>     -DHAVE_CONFIG_H
>     -DFEAT_GUI_GTK
>     -pthread
>     -I/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/include/atk-1.0
>     -I/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/include/cairo
>     
> -I/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/include/freetype2
>     
> -I/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/include/libpng16
>     
> -I/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/include/freetype2
>     
> -I/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/include/gdk-pixbuf-2.0
>     -I/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/include/glib-2.0
>     
> -I/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib/glib-2.0/include
>     -I/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/include/gtk-2.0
>     
> -I/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib/gtk-2.0/include
>     
> -I/gnu/store/d38nlz5qndhf677ckbrmb2hn5b63yiyx-harfbuzz-1.5.1/include/harfbuzz
>     
> -I/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/include/libpng16
>     
> -I/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/include/pango-1.0
>     
> -I/gnu/store/d7mj8cqdrh8c9ydnrv6zzd48lmb044yz-pixman-0.34.0/include/pixman-1
>     -g
>     -O2
>     -U_FORTIFY_SOURCE
>     -D_FORTIFY_SOURCE=1
> 
> Linking:
> gcc -L/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/lib
>     -L/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/lib
>     -L/gnu/store/a78cx94n43fd4gkasjqzjhjldg2bhipi-fontconfig-2.12.3/lib
>     -L/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib
>     -L/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/lib
>     -L/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib
>     -L/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib
>     -L/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/lib
>     -L.
>     -fstack-protector
>     -rdynamic
>     -Wl,-export-dynamic
>     -Wl,-E
>     
> -Wl,-rpath,/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
>     -Wl,--as-needed
>     -o vim
>     -L/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/lib
>     -L/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/lib
>     -L/gnu/store/a78cx94n43fd4gkasjqzjhjldg2bhipi-fontconfig-2.12.3/lib
>     -L/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib
>     -L/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/lib
>     -L/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib
>     -L/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib
>     -L/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/lib
>     -lgtk-x11-2.0
>     -lgdk-x11-2.0
>     -lpangocairo-1.0
>     -latk-1.0
>     -lcairo
>     -lgdk_pixbuf-2.0
>     -lgio-2.0
>     -lpangoft2-1.0
>     -lpango-1.0
>     -lgobject-2.0
>     -lglib-2.0
>     -lfontconfig
>     -lfreetype
>     -lSM
>     -lICE
>     -lXpm
>     -lXt
>     -lX11
>     -lXdmcp
>     -lSM
>     -lICE
>     -lm
>     -lncurses
>     -lnsl
>     -lacl
>     -lattr
>     -lgpm
>     -ldl
>     -L/gnu/store/12yp700dkx6rf17lkf8pgq43nxmhr0lx-lua-5.3.4/lib
>     -llua
>     -Wl,-E
>     
> -Wl,-rpath,/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
>     -fstack-protector-strong
>     -L/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib
>     
> -L/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
>     -lperl
>     -lpthread
>     -lnsl
>     -ldl
>     -lm
>     -lcrypt
>     -lutil
>     -lc
>     
> -L/gnu/store/2dlpgzv0rmfd7v71d6h2gc7r2251hzwh-python-3.5.3/lib/python3.5/config-3.5m
>     -lpython3.5m
>     -lpthread
>     -ldl
>     -lutil
>     -lm
>     -L/gnu/store/1hl6bvvh1rxwj6p5npf36m2r3n7xvqdw-tcl-8.6.6/lib
>     -ltcl8.6
>     -ldl
>     -lpthread
>     -lieee
>     -lm
>     -Wl,-rpath,/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib
>     -L/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib
>     -lruby-static
>     -lpthread
>     -ldl
>     -lcrypt
>     -lm
>     -L/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib
> 
> 
> 
> 
> -- 
> ウィルソン ブランドン
> 早稲田大学基幹理工学研究科応用数学専攻
> 
> Brandon M. Wilson
> Waseda University
> School of Fundamental Science and Engineering
> Department of Applied Mathematics



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