bug#29113: Warnings when starting vim: Relink <libpng/libfreetype> with <libpthread> for IFUNC symbol `longjmp'

[B. Wilson]

Hello,

I recently installed vim-full (8.0.1207) and it's throwing some linker (?)
warnings at me on startup. The gory details are below, and any help getting to
the bottom of this would be much appreciated.


## Errors

$ vim -u NONE -esc  # `-u NONE' disables .vimrc, `-esc q' quits immediately
vim: Relink 
`/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/lib/libpng16.so.16' 
with 
`/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
for IFUNC symbol `longjmp'
vim: Relink 
`/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib/libfreetype.so.6' 
with 
`/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib/libpthread.so.0' 
for IFUNC symbol `longjmp'


## Environment

$ lsb_release -a
LSB Version:    1.0
Distributor ID: VoidLinux
Description:    Void Linux
Release:        rolling
Codename:       void

$ guix --version
guix (GNU Guix) 5010d0e36452882eb95666467bb983efa8cca081
...

$ guix package -I vim-full
vim-full 8.0.1207 out 
/gnu/store/jbpkmj3acvjghjbf14372vwm4rs15c4n-vim-full-8.0.1207

$ vim --version
<copied and formatted below>

## Extra Information

There does appear to be one other instance of a user experiencing the same
errors but with the package `rofi'. The relevant thread is #28168. In this
case, a simple `guix pull && guix package -u' seemed to get rid of the warnings
for them. That's not working for me, and in any case I'd like to figure out
exactly what's going on.


## Vim Version

VIM - Vi IMproved 8.0 (2016 Sep 12, compiled Jan  1 1970 00:00:01)
Included patches: 1-1207
Compiled by address@hidden
Huge version with GTK2 GUI.  Features included (+) or not (-):
+acl             +file_in_path    +mouse_sgr       +tag_old_static
+arabic          +find_in_path    -mouse_sysmouse  -tag_any_white
+autocmd         +float           +mouse_urxvt     +tcl
+balloon_eval    +folding         +mouse_xterm     +termguicolors
+browse          -footer          +multi_byte      +terminal
++builtin_terms  +fork()          +multi_lang      +terminfo
+byte_offset     +gettext         -mzscheme        +termresponse
+channel         -hangul_input    +netbeans_intg   +textobjects
+cindent         +iconv           +num64           +timers
+clientserver    +insert_expand   +packages        +title
+clipboard       +job             +path_extra      +toolbar
+cmdline_compl   +jumplist        +perl            +user_commands
+cmdline_hist    +keymap          +persistent_undo +vertsplit
+cmdline_info    +lambda          +postscript      +virtualedit
+comments        +langmap         +printer         +visual
+conceal         +libcall         +profile         +visualextra
+cryptv          +linebreak       -python          +viminfo
+cscope          +lispindent      +python3         +vreplace
+cursorbind      +listcmds        +quickfix        +wildignore
+cursorshape     +localmap        +reltime         +wildmenu
+dialog_con_gui  +lua             +rightleft       +windows
+diff            +menu            +ruby            +writebackup
+digraphs        +mksession       +scrollbind      +X11
+dnd             +modify_fname    +signs           -xfontset
-ebcdic          +mouse           +smartindent     +xim
+emacs_tags      +mouseshape      +startuptime     +xpm
+eval            +mouse_dec       +statusline      +xsmp_interact
+ex_extra        +mouse_gpm       -sun_workshop    +xterm_clipboard
+extra_search    -mouse_jsbterm   +syntax          -xterm_save
+farsi           +mouse_netterm   +tag_binary      
   system vimrc file: "$VIM/vimrc"
     user vimrc file: "$HOME/.vimrc"
 2nd user vimrc file: "~/.vim/vimrc"
      user exrc file: "$HOME/.exrc"
  system gvimrc file: "$VIM/gvimrc"
    user gvimrc file: "$HOME/.gvimrc"
2nd user gvimrc file: "~/.vim/gvimrc"
       defaults file: "$VIMRUNTIME/defaults.vim"
    system menu file: "$VIMRUNTIME/menu.vim"
  fall-back for $VIM: "
/gnu/store/jbpkmj3acvjghjbf14372vwm4rs15c4n-vim-full-8.0.1207/share/vim"
Compilation:
gcc -c
    -I.
    -Iproto
    -DHAVE_CONFIG_H
    -DFEAT_GUI_GTK
    -pthread
    -I/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/include/atk-1.0
    -I/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/include/cairo
    -I/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/include/freetype2
    -I/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/include/libpng16
    -I/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/include/freetype2
    
-I/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/include/gdk-pixbuf-2.0
    -I/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/include/glib-2.0
    
-I/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib/glib-2.0/include
    -I/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/include/gtk-2.0
    
-I/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib/gtk-2.0/include
    
-I/gnu/store/d38nlz5qndhf677ckbrmb2hn5b63yiyx-harfbuzz-1.5.1/include/harfbuzz
    -I/gnu/store/66bqq32pq33r3vz53kiwv36b7fqqprpy-libpng-1.6.29/include/libpng16
    
-I/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/include/pango-1.0
    -I/gnu/store/d7mj8cqdrh8c9ydnrv6zzd48lmb044yz-pixman-0.34.0/include/pixman-1
    -g
    -O2
    -U_FORTIFY_SOURCE
    -D_FORTIFY_SOURCE=1

Linking:
gcc -L/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/lib
    -L/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/lib
    -L/gnu/store/a78cx94n43fd4gkasjqzjhjldg2bhipi-fontconfig-2.12.3/lib
    -L/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib
    -L/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/lib
    -L/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib
    -L/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib
    -L/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/lib
    -L.
    -fstack-protector
    -rdynamic
    -Wl,-export-dynamic
    -Wl,-E
    
-Wl,-rpath,/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
    -Wl,--as-needed
    -o vim
    -L/gnu/store/jc0vlr9c8ss28r9cv5ics2bxm3qix0aw-atk-2.24.0/lib
    -L/gnu/store/jnz46rnx9a10jvlkal3ddkc122k9n5vc-cairo-1.14.10/lib
    -L/gnu/store/a78cx94n43fd4gkasjqzjhjldg2bhipi-fontconfig-2.12.3/lib
    -L/gnu/store/xmsn5afiyqi206i5gm6qn4gab0aij80b-freetype-2.8/lib
    -L/gnu/store/ialqfsfb6r966h2laln3dz78zfq952hh-gdk-pixbuf-2.36.10/lib
    -L/gnu/store/aiyjb393x6p4zkw59r8qmlw7ikv0pdnl-glib-2.52.3/lib
    -L/gnu/store/cmcl8q9s1c49ps0j2ns8h5dfyl7xfj4s-gtk+-2.24.31/lib
    -L/gnu/store/di9m4c8pw87ybpwlpyrmppmf9k0li8js-pango-1.40.12/lib
    -lgtk-x11-2.0
    -lgdk-x11-2.0
    -lpangocairo-1.0
    -latk-1.0
    -lcairo
    -lgdk_pixbuf-2.0
    -lgio-2.0
    -lpangoft2-1.0
    -lpango-1.0
    -lgobject-2.0
    -lglib-2.0
    -lfontconfig
    -lfreetype
    -lSM
    -lICE
    -lXpm
    -lXt
    -lX11
    -lXdmcp
    -lSM
    -lICE
    -lm
    -lncurses
    -lnsl
    -lacl
    -lattr
    -lgpm
    -ldl
    -L/gnu/store/12yp700dkx6rf17lkf8pgq43nxmhr0lx-lua-5.3.4/lib
    -llua
    -Wl,-E
    
-Wl,-rpath,/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
    -fstack-protector-strong
    -L/gnu/store/3h31zsqxjjg52da5gp3qmhkh4x8klhah-glibc-2.25/lib
    
-L/gnu/store/gqz3akl1w51v33vcfjsbg1mym5ww3sww-perl-5.26.0/lib/perl5/5.26.0/x86_64-linux-thread-multi/CORE
    -lperl
    -lpthread
    -lnsl
    -ldl
    -lm
    -lcrypt
    -lutil
    -lc
    
-L/gnu/store/2dlpgzv0rmfd7v71d6h2gc7r2251hzwh-python-3.5.3/lib/python3.5/config-3.5m
    -lpython3.5m
    -lpthread
    -ldl
    -lutil
    -lm
    -L/gnu/store/1hl6bvvh1rxwj6p5npf36m2r3n7xvqdw-tcl-8.6.6/lib
    -ltcl8.6
    -ldl
    -lpthread
    -lieee
    -lm
    -Wl,-rpath,/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib
    -L/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib
    -lruby-static
    -lpthread
    -ldl
    -lcrypt
    -lm
    -L/gnu/store/vam0l4xw5v09b0kdfsm7hkfsv0c3ypy2-ruby-2.4.2/lib




-- 
ウィルソン ブランドン
早稲田大学基幹理工学研究科応用数学専攻

Brandon M. Wilson
Waseda University
School of Fundamental Science and Engineering
Department of Applied Mathematics

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