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From: | Ed Morton |
Subject: | Re: manual section 4.7.1 |
Date: | Tue, 4 Apr 2023 11:05:48 -0500 |
User-agent: | Mozilla/5.0 (Windows NT 10.0; Win64; x64; rv:102.0) Gecko/20100101 Thunderbird/102.9.1 |
If the CSV file format as used by --csv defines the record terminator as CR LF and --csv strips the CRs then it's output would no longer be valid CSV by that same definition so that's a surprising choice. Does that mean it'll fail if the input is just LF-terminated as most Unix files are (and in which case you couldn't write `awk --csv 'foo' input | awk --csv 'bar'`)?
Ed. On 4/4/2023 10:48 AM, Andrew J. Schorr wrote:
Hi Ed, The CSV file format defines the record terminator as CR LF, so the new --csv option does in fact strip CRs. Regards, Andy On Tue, Apr 04, 2023 at 10:32:49AM -0500, Ed Morton wrote:Are you sure in the FPAT output you're not just seeing the expected effects of there being a CR in your data? The `--csv` output is the one that looks wrong to me if you have `CR`s at the end of each line, unless `--csv` is documented to strip `CR`s from the output. Please provide the input file you used as it's hard to tell what's going on from just the output. Also pipe the output to `cat -v` or `od -c` or similar so we can see where the CRs are in the output but my best guess right now is that `FPAT` is retaining the CRs as expected while `--csv` is stripping them (which may or may not be expected - I'm not familiar with that option). Ed. On 4/4/2023 5:12 AM,cph1968@proton.me wrote:the regex fp[2] in section 4.7.1 (below) don't quite cut it if the CSV file records end in both CR and NL [0H0D 0H0A]. I believe this is a common feature of Windows files. A simple fix is however to use the gawk --csv option. ❯ head -n 2 TSCAINV_022023.csv| gawk -f print-fields.awkID,CASRN,casregno,UID,EXP,ChemName,DEF,UVCB,FLAG,ACTIVITY F = 1 <ID,CASRN,casregno,UID,EXP,ChemName,DEF,UVCB,FLAG,ACTIVITY 1,50-00-0,50000,,,Formaldehyde,,,,ACTIVE F = 1 <1,50-00-0,50000,,,Formaldehyde,,,,ACTIVEnote here that the last '>' is first character on the next line. output using the --csv option: ❯ head -n 2 TSCAINV_022023.csv| gawk --csv -f print-fields.awk <ID,CASRN,casregno,UID,EXP,ChemName,DEF,UVCB,FLAG,ACTIVITY> NF = 10 <ID><CASRN><casregno><UID><EXP><ChemName><DEF><UVCB><FLAG><ACTIVITY> <1,50-00-0,50000,,,Formaldehyde,,,,ACTIVE> NF = 10 <1><50-00-0><50000><><><Formaldehyde><><><><ACTIVE> much better :-) ❯ cat print-fields.awk { print "<" $0 ">" printf("NF = %s ", NF) for (i = 1; i <= NF; i++) { printf("<%s>", $i) } print "" }>from section 4.7.1:BEGIN { fp[0] = "([^,]+)|(\"[^\"]+\")" fp[1] = "([^,]*)|(\"[^\"]+\")" fp[2] = "([^,]*)|(\"([^\"]|\"\")+\")" FPAT = fp[fpat+0] } kind regards, cph1968
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